Struct gapi_grpc::google::genomics::v1::VariantAnnotation

pub struct VariantAnnotation {
    pub type: i32,
    pub effect: i32,
    pub alternate_bases: String,
    pub gene_id: String,
    pub transcript_ids: Vec<String>,
    pub conditions: Vec<ClinicalCondition>,
    pub clinical_significance: i32,
}

Fields

type: i32

Type has been adapted from ClinVar’s list of variant types.

effect: i32

Effect of the variant on the coding sequence.

alternate_bases: String

The alternate allele for this variant. If multiple alternate alleles exist at this location, create a separate variant for each one, as they may represent distinct conditions.

gene_id: String

Google annotation ID of the gene affected by this variant. This should be provided when the variant is created.

transcript_ids: Vec<String>

Google annotation IDs of the transcripts affected by this variant. These should be provided when the variant is created.

conditions: Vec<ClinicalCondition>

The set of conditions associated with this variant. A condition describes the way a variant influences human health.

clinical_significance: i32

Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/

Implementations

impl VariantAnnotation

pub fn type(&self) -> Type

Returns the enum value of type, or the default if the field is set to an invalid enum value.

pub fn set_type(&mut self, value: Type)

Sets type to the provided enum value.

pub fn effect(&self) -> Effect

Returns the enum value of effect, or the default if the field is set to an invalid enum value.

pub fn set_effect(&mut self, value: Effect)

Sets effect to the provided enum value.

pub fn clinical_significance(&self) -> ClinicalSignificance

Returns the enum value of clinical_significance, or the default if the field is set to an invalid enum value.

pub fn set_clinical_significance(&mut self, value: ClinicalSignificance)

Sets clinical_significance to the provided enum value.

Trait Implementations

impl Clone for VariantAnnotation

fn clone(&self) -> VariantAnnotation

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for VariantAnnotation

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for VariantAnnotation

fn default() -> VariantAnnotation

Returns the “default value” for a type.

impl Message for VariantAnnotation

fn encode_raw<B>(&self, buf: &mut B) where
    B: BufMut, 

fn merge_field<B>(
    &mut self,
    tag: u32,
    wire_type: WireType,
    buf: &mut B,
    ctx: DecodeContext
) -> Result<(), DecodeError> where
    B: Buf, 

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

pub fn encode<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message to a buffer.

pub fn encode_length_delimited<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message with a length-delimiter to a buffer.

pub fn decode<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes an instance of the message from a buffer.

pub fn decode_length_delimited<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes a length-delimited instance of the message from the buffer.

pub fn merge<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes an instance of the message from a buffer, and merges it into self.

pub fn merge_length_delimited<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq<VariantAnnotation> for VariantAnnotation

fn eq(&self, other: &VariantAnnotation) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &VariantAnnotation) -> bool

This method tests for !=.

impl StructuralPartialEq for VariantAnnotation