Struct gapi_grpc::google::genomics::v1::Transcript

pub struct Transcript {
    pub gene_id: String,
    pub exons: Vec<Exon>,
    pub coding_sequence: Option<CodingSequence>,
}

A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.

Fields

gene_id: String

The annotation ID of the gene from which this transcript is transcribed.

exons: Vec<Exon>

The exons that compose this transcript. This field should be unset for genomes where transcript splicing does not occur, for example prokaryotes.

Introns are regions of the transcript that are not included in the spliced RNA product. Though not explicitly modeled here, intron ranges can be deduced; all regions of this transcript that are not exons are introns.

Exonic sequences do not necessarily code for a translational product (amino acids). Only the regions of exons bounded by the [codingSequence][google.genomics.v1.Transcript.coding_sequence] correspond to coding DNA sequence.

Exons are ordered by start position and may not overlap.

coding_sequence: Option<CodingSequence>

The range of the coding sequence for this transcript, if any. To determine the exact ranges of coding sequence, intersect this range with those of the [exons][google.genomics.v1.Transcript.exons], if any. If there are any [exons][google.genomics.v1.Transcript.exons], the [codingSequence][google.genomics.v1.Transcript.coding_sequence] must start and end within them.

Note that in some cases, the reference genome will not exactly match the observed mRNA transcript e.g. due to variance in the source genome from reference. In these cases, [exon.frame][google.genomics.v1.Transcript.Exon.frame] will not necessarily match the expected reference reading frame and coding exon reference bases cannot necessarily be concatenated to produce the original transcript mRNA.

Trait Implementations

impl Clone for Transcript

fn clone(&self) -> Transcript

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Transcript

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Transcript

fn default() -> Transcript

Returns the “default value” for a type.

impl Message for Transcript

fn encode_raw<B>(&self, buf: &mut B) where
    B: BufMut, 

fn merge_field<B>(
    &mut self,
    tag: u32,
    wire_type: WireType,
    buf: &mut B,
    ctx: DecodeContext
) -> Result<(), DecodeError> where
    B: Buf, 

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

pub fn encode<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message to a buffer.

pub fn encode_length_delimited<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message with a length-delimiter to a buffer.

pub fn decode<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes an instance of the message from a buffer.

pub fn decode_length_delimited<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes a length-delimited instance of the message from the buffer.

pub fn merge<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes an instance of the message from a buffer, and merges it into self.

pub fn merge_length_delimited<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq<Transcript> for Transcript

fn eq(&self, other: &Transcript) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Transcript) -> bool

This method tests for !=.

impl StructuralPartialEq for Transcript