Struct gapi_grpc::google::genomics::v1::Reference

pub struct Reference {
    pub id: String,
    pub length: i64,
    pub md5checksum: String,
    pub name: String,
    pub source_uri: String,
    pub source_accessions: Vec<String>,
    pub ncbi_taxon_id: i32,
}

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.

For more genomics resource definitions, see Fundamentals of Google Genomics

Fields

id: String

The server-generated reference ID, unique across all references.

length: i64

The length of this reference’s sequence.

md5checksum: String

MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.

name: String

The name of this reference, for example 22.

source_uri: String

The URI from which the sequence was obtained. Typically specifies a FASTA format file.

source_accessions: Vec<String>

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example GCF_000001405.26.

ncbi_taxon_id: i32

ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.

Trait Implementations

impl Clone for Reference

fn clone(&self) -> Reference

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Reference

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Reference

fn default() -> Reference

Returns the “default value” for a type.

impl Message for Reference

fn encode_raw<B>(&self, buf: &mut B) where
    B: BufMut, 

fn merge_field<B>(
    &mut self,
    tag: u32,
    wire_type: WireType,
    buf: &mut B,
    ctx: DecodeContext
) -> Result<(), DecodeError> where
    B: Buf, 

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

pub fn encode<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message to a buffer.

pub fn encode_length_delimited<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message with a length-delimiter to a buffer.

pub fn decode<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes an instance of the message from a buffer.

pub fn decode_length_delimited<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes a length-delimited instance of the message from the buffer.

pub fn merge<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes an instance of the message from a buffer, and merges it into self.

pub fn merge_length_delimited<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq<Reference> for Reference

fn eq(&self, other: &Reference) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Reference) -> bool

This method tests for !=.

impl StructuralPartialEq for Reference