Struct gapi_grpc::google::genomics::v1::LinearAlignment

pub struct LinearAlignment {
    pub position: Option<Position>,
    pub mapping_quality: i32,
    pub cigar: Vec<CigarUnit>,
}

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

Fields

position: Option<Position>

The position of this alignment.

mapping_quality: i32

The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations.

Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer.

cigar: Vec<CigarUnit>

Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference.

Trait Implementations

impl Clone for LinearAlignment

fn clone(&self) -> LinearAlignment

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for LinearAlignment

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for LinearAlignment

fn default() -> LinearAlignment

Returns the “default value” for a type.

impl Message for LinearAlignment

fn encode_raw<B>(&self, buf: &mut B) where
    B: BufMut, 

fn merge_field<B>(
    &mut self,
    tag: u32,
    wire_type: WireType,
    buf: &mut B,
    ctx: DecodeContext
) -> Result<(), DecodeError> where
    B: Buf, 

fn encoded_len(&self) -> usize

Returns the encoded length of the message without a length delimiter.

fn clear(&mut self)

Clears the message, resetting all fields to their default.

pub fn encode<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message to a buffer.

pub fn encode_length_delimited<B>(&self, buf: &mut B) -> Result<(), EncodeError> where
    B: BufMut, 

Encodes the message with a length-delimiter to a buffer.

pub fn decode<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes an instance of the message from a buffer.

pub fn decode_length_delimited<B>(buf: B) -> Result<Self, DecodeError> where
    Self: Default,
    B: Buf, 

Decodes a length-delimited instance of the message from the buffer.

pub fn merge<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes an instance of the message from a buffer, and merges it into self.

pub fn merge_length_delimited<B>(&mut self, buf: B) -> Result<(), DecodeError> where
    B: Buf, 

Decodes a length-delimited instance of the message from buffer, and merges it into self.

impl PartialEq<LinearAlignment> for LinearAlignment

fn eq(&self, other: &LinearAlignment) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &LinearAlignment) -> bool

This method tests for !=.

impl StructuralPartialEq for LinearAlignment